Fecal amino acid analysis provides a quantitative assessment of residual amino acids, offering direct insight into protein digestibility, amino acid utilization, and nutritional efficiency.

Where it helps?
- In production animals, fecal amino acid levels help link diet formulation, protein quality, and amino acid balance to performance outcomes (ADG, FCR, uniformity).
- Identifies inefficient protein digestion and excess amino acids reaching the hindgut, which may drive undesirable fermentation.
- Supports optimization of amino acid formulation, protein levels, and enzyme strategies (e.g., proteases).
- Provides evidence for gut health and feed additive solutions improving nutrient absorption and utilization, especially when paired with downstream fermentation markers.
- Enables monitoring of protein utilization over time, complementing BCFA for branched-chain amino acid fermentation intensity, Protein Fermentation Products for aromatic putrefactive metabolites, and BGA + Ammonia for microbial stress and nitrogen waste.
- For feed additive companies, this analysis provides a clear, mechanism-linked readout of improved protein efficiency and reduced nutrient losses.
How does it work?
We typically analyze feces or digesta (e.g., ileum/cecum/colon), depending on study design and objectives.
- Feces: practical for overall protein digestibility assessment in field conditions.
- Digesta: provides higher-resolution insights into where digestion limitations occur.
What do we measure?
We quantify a comprehensive set of amino acids to evaluate protein digestion and utilization:
- Alanine
- Arginine
- Sum of Asparagine and Aspartic acid
- Cysteine (reported as cystine)
- Sum of Glutamine and Glutamic acid
- Glycine
- Histidine
- Isoleucine
- Leucine
- Lysine
- Methionine
- Phenylalanine
- Proline
- Serine
- Threonine
- Tryptophan (not quantified)
- Tyrosine
- Valine
Interpretation context (recommended):
- Elevated fecal amino acid levels indicate incomplete digestion and reduced protein utilization efficiency.
- Profiles can reveal limiting amino acids, imbalance in formulation, or enzyme inefficiencies.
- When combined with BCFA, Protein Fermentation Products, and BGA + Ammonia data, results provide a complete view of protein digestion, fermentation intensity, putrefactive metabolite formation, and nitrogen-waste outcomes.
Typical use cases
- Protein formulation optimization: refine crude protein levels and amino acid balance.
- Protease validation: demonstrate improved amino acid digestibility.
- Ingredient comparison: assess digestibility of different protein sources.
- Weaning and transitions: monitor adaptation of digestive capacity.
- Gut health challenges: link poor digestion to downstream fermentation issues.
Sample types
- Feces (routine monitoring, on-farm sampling)
- Digesta (ileum/cecum/colon) from controlled trials
How to Order
- Contact us either by email diagnostics@alimetrics.com or alternatively use the contact form below.
- Indicate your interest in the BioFreeze™ sample collection solution, one or more of our unique gut health panels or a customized selection of analyses.
- We can help you plan a solution best suited to your needs.
- We will provide you with a quotation and further instructions within two business days.

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